Microbiology
(General principles of microbial concepts)
Microorganisms:
Microorganisms (Latin micro =
small) are living beings so small (< 40 Āµm or 0.04
mm) that they are not visible by the naked eye. Microorganisms related to human health include certain bacteria,
viruses, fungi and parasites.
Types of Microorganisms:
Microorganisms can be, according to their
characteristics, divided into several groups:
- bacteria,
viruses, certain fungi and parasites
- pathogenic (capable of
causing disease), non-pathogenic, and opportunistic (causing disease when they have
an opportunity, like in people with low
immune system)
- acellular (without cell, like
viruses), unicellular (bacteria, yeasts and certain
parasites), or multi-cellular (molds)
Bacteria are unicellular organisms, about few microns in size (1 micron (Āµm) =
1/1,000 of a millimetre), consisting of DNA, cytoplasm, structures
needed for metabolism and reproduction, cell membrane, cell wall and
capsule .Certain bacteria use flagella, tail-like appendages, to propel
themselves.
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Bacterial structure |
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Bacteria multiply asexually by dividing into two daughter cells |
Bacteria can be divided into
several groups:
- Spheres
or cocci (like Staphylococcus aureus),
rods or bacilli (like Lactobacillus acidophilus),
spirals or spirochetes (like Treponema pallidum);
bacterial shape can help in their recognizing under the microscope
- Aerobic bacteria,
like Mycobacterium tuberculosis, need
oxygen to thrive, while anaerobic, like Clostsridium
difficile, do not. Facultative anaerobic
bacteria, like Pseudomonas aureginosa, can
live in aerobic and anaerobic environment.
- Gram positive (G+) bacteria,
like Streptococcus, and Gram negative (G-) bacteria, like Klebsiella
- Pathogenic and non-pathogenic bacteria
Certain bacteria can form endospores, a kind of encapsulated bunkers within a
bacteria that enable vital parts of bacteria to survive in harsh
conditions, like freezing or boiling water, dessication, lack of nutrients,
etc. Some bacteria can survive weeks, and some millions of years in this form.
In the human body, bacteria usually cause
localized infections, like pneumonia or skin infections. Bacterial
infections can be diagnosed by growing a bacterial culture from
a sample of infected body fluid (e.g. urine, blood), stool, discharge (e.g.
sputum) or tissue (e.g. mucosal layer of the stomach). Most of bacterial
infections can be successfully treated by anti-bacterial drugs – antibiotics.
Examples of bacteria pathogenic for a human are:
- Staphylococcus aureus, causing skin infections,
pneumonia, and infection of the heart valves, etc.
- Streptococcus pyogenes,
causing “strep throat”, cellulitis, etc.
- Neisseria gonorrheae,
causing gonorrhea
- Salmonella,
causing diarrhea in food poisoning
- Helicobacter pylori,
causing chronic gastritis
- Mycoplasma,
causing atypical pneumonia
Examples of non-pathogenic bacteria:
- Staphylococcus epidermidis, a part of
normal skin flora
- Lactobacillus acidophilus, a part of normal
intestinal flora
Examples of opportunistic bacteria:
- Certain intestinal bacteria, like Escherichia coli and Enterobacter live in the human
intestine without causing any symptoms, but in a person with lowered immune system they may overgrow
and cause a bowel infection.
2.
Viruses
Viruses are simple microorganisms, containing only DNA or
RNA molecule and capsule. They cannot survive outside the host for long
periods, so they are mainly transmitted by blood-to-blood or stool-to-mouth
route. In the human body, they have to invade the cells to multiply
Virus cycle: entry of
herpes simplex virus (HSV) into the cell (on the left), multiplying within the
cell and release (right) from the cell
Viruses usually cause systemic infections, affecting the
whole body. Examples of viruses, pathogenic for a human:
- Rhinovirus, causing common cold
- Influenzavirus, causing flu, bird flu, swine flu
- Herpes simplex virus causing herpes labialis
(cold sore) or herpes genitalis
- HIV, causing AIDS
- Ebolavirus, causing hemorrhagic fever
Viruses can be diagnosed by finding specific antibodies in
the sample of blood (serologic tests). Vaccination against several virus
infections is possible; only few viral infections can be treated by anti-viral
medications, though.
3. Fungi
Fungi are widely present in the environment and also on the
human skin, gut and vagina.
Fungi are subdivided
on the basis of their life cycles, the presence or structure of their fruiting
body and the arrangement of and type of spores (reproductive or distributional
cells) they produce.
The three major groups
of fungi are:
·
multicellular filamentous moulds
·
macroscopic filamentous fungi that form large fruiting
bodies. Sometimes the group is referred to as ‘mushrooms’, but the
mushroom is just the part of the fungus we see above ground which is also known
as the fruiting body.
·
single celled microscopic yeasts
4.
Parasites
Human intestinal
parasites are either one-cell organisms or intestinal worms that live in the small or
large intestine and use the stool or blood from intestinal wall as a
source of food.
One-cell organisms, like Giardia lamblia, also
called Giardia duodenale
1),Cryptosporidium (crypto)
and Cyclospora,
utilize nutrients from the stool. They belong to a living kingdom Protozoa (Gk. protos =
first; zoa =
animals). They may cause inflammation of thesmall intestine thus hampering absorption of
nutrients. Entamoeba hystolytica lives
predominantly in the colon.
Intestinal Worms (Helminths):
Intestinal worms (helminths), like roundworms (hookworms), whipworms, Ascaris andTrichinella), tapeworms
and flukes, are few millimeters to several meters in size, they eat the
bowel content or suck the blood from the intestinal wall and can cause
about the same symptoms as one-cell parasites.
Beneficial
Microorganisms
Microorganisms, like certain bacteria and yeasts, living on
the human skin or in the nose, mouth, throat, small and large intestine and
vagina, are part of the normal human flora; they prevent overgrowth of harmful microorganisms. Some
of these microbes, when overgrow, may become pathogenic, though.
Harmful or Pathogenic Microorganisms
Pathogenic means capable of causing disease.
An actual harmful effect of a microbe to the body depends on:
- Microbial virulence - a
relative ability of a microbe to cause a disease; for example, a certain, highly
virulent subtype of influenza virus may cause a bird flu, which is deadly
in a high percent, while “usual” influenza virus is not.
- Invasion through the body’s barriers; staph bacteria might not
cause any harm to a person with an intact skin, but can cause a severe
infection of a skin wound.
- Amount of microbes; eating few bites of food
contaminated with staph bacteria may go unnoticed, while eating the whole
portion of the same food may cause a severe food poisoning.
- Body’s defense (immune) system; patients
with a weak immune system,
like
those receiving corticosteroids, often get oral thrush (candida infection
of the mouth), while otherwise healthy people do not.